PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00016.1_g00067.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 169aa    MW: 18526.3 Da    PI: 10.009
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00016.1_g00067.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.25.5e-1688149162
                              XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                              eke kr +r+ +NR++A+  R+RKka++ eLe++vk Le+ N++L ++l++l++e + l++ 
  Rsa1.0_00016.1_g00067.1  88 EKETKRLKRLLRNRVSAQQARERKKAYLGELENRVKDLENRNSELEERLSTLQNENQMLRQI 149
                              899******************************************************99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000411.7E-687103IPR001630cAMP response element binding (CREB) protein
SMARTSM003382.5E-1688152IPR004827Basic-leucine zipper domain
PfamPF001701.6E-1488150IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.74890153IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.5E-1792152No hitNo description
SuperFamilySSF579596.88E-1492150No hitNo description
CDDcd147045.59E-1893144No hitNo description
PROSITE patternPS00036095110IPR004827Basic-leucine zipper domain
PRINTSPR000411.7E-6105125IPR001630cAMP response element binding (CREB) protein
PRINTSPR000411.7E-6125142IPR001630cAMP response element binding (CREB) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MQEQTTSSLP ASSMPSSSER SSSSAPHLEI KEGIESDEEI RRVPEFGGEG TGKEISGRES  60
GSGTGQDQTQ ITVGGGEGQR KRGRTPAEKE TKRLKRLLRN RVSAQQARER KKAYLGELEN  120
RVKDLENRNS ELEERLSTLQ NENQMLRQIL KNTTGNKRGG GGSNADASL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A2e-18113152342Transcription factor HY5
2oqq_B2e-18113152342Transcription factor HY5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052951e-163AB005295.1 Arabidopsis thaliana mRNA for HY5, complete cds.
GenBankAB0054561e-163AB005456.1 Arabidopsis thaliana mRNA for HY5, complete cds.
GenBankAK2293621e-163AK229362.1 Arabidopsis thaliana mRNA for bZip transcription factor HY5 / AtbZip56, complete cds, clone: RAFL16-60-N08.
GenBankBT0255191e-163BT025519.1 Arabidopsis thaliana At5g11260 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013668083.16e-91PREDICTED: transcription factor HY5
SwissprotO246462e-84HY5_ARATH; Transcription factor HY5
TrEMBLA0A078BYF77e-91A0A078BYF7_BRANA; BnaA10g21200D protein
STRINGBra008976.1-P3e-89(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56912749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.12e-64bZIP family protein